MOMD:
Mouse Oral Microbiome Database
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MOMD Genome Explorer
Selected genome:
Bacteroides acidifaciens
8_33DSS_C5_S8
Change genome:
Available genomes
1. Actinomyces bowdenii WMus004.1
2. Bacteroides acidifaciens 19428wH3_P2318
3. Bacteroides acidifaciens 8_33DSS_C5_S8
4. Citrobacter koseri 19428wH4_BL23
5. Dysgonomonas mossii 19428wE4_P11
6. Enterococcus gallinarum 19428wB3_C2
7. Enterococcus gallinarum ENT.1
8. Escherichia coli 19428wD4_HM13
9. Gemella palaticanis CIP106318T.1
10. Gemella sp. 19428wG2_WT2a
11. Gemella sp. GH3.1
12. Gemella sp. GL1.1
13. Granulicatella sp. 19428wC4_WM01
14. Jeotgalicoccus nanhaiensis 19428wE5_W307
15. Lactobacillus johnsonii 19428wE2_CC3
16. Lactobacillus murinus LAC.1
17. Ligilactobacillus murinus 19428wF2_HT12
18. Ligilactobacillus murinus 2_2BalbC1BO2_S2
19. Mammaliicoccus lentus 19428wC1_HT5
20. Mammaliicoccus lentus 19428wG1_AE2
21. Mammaliicoccus lentus 3_3BalbC2O2_S3
22. Mammaliicoccus sciuri 19428wE1_BL01
23. Mammaliicoccus sciuri ACT.1
24. Microbacterium paludicola 19428wA4_P1012
25. Micrococcus aloeverae 19428wE3_DK2
26. Micrococcus yunnanensis 19428wG4_IOV6
27. Muribacter muris 19428wC3_WT12
28. Muribacter muris 7_18CXCR221ANO_S7
29. Neisseria sp. 19428wB4_WF04
30. Parabacteroides goldsteinii 19428wG3_P14
31. Pasteurella sp. 19428wF3_WM03
32. Proteus mirabilis 19428wB5_irhom_Sw
33. Providencia alcalifaciens WMus003.1
34. Rothia nasimurium 19428wA5_irhom_31
35. Sanguibacter inulinus DSM100099.1
36. Shigella flexneri 19428wH2_1568
37. Staphylococcus arlettae 19428wH1_IOV5
38. Staphylococcus aureus 19428wD1_P36
39. Staphylococcus aureus 4_5BalbC4O2_S4
40. Staphylococcus aureus STF.1
41. Staphylococcus capitis GW2.1
42. Staphylococcus saprophyticus 19428wB1_WM06
43. Staphylococcus warneri 19428wF1_P912
44. Staphylococcus xylosus 19428wA1_WT6
45. Streptococcus acidominimus 19428wB2_HT4
46. Streptococcus acidominimus 6_8CXCR23O2_S6
47. Streptococcus cuniculi 19428wD2_WM131
48. Streptococcus danieliae 1_1BalbC1O2_S1
49. Streptococcus danieliae STR.1
50. Streptococcus sp. 19428wA2_WM07
51. Streptococcus sp. 19428wC2_LYSM12
52. Streptococcus sp. 19428wD3_AN2
from a total of 52 genomes
Available tools:
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PROKKA Annotation
NCBI Annotation
BLAST Against Genome
Genome Info
Taxon Description
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PROKKA Genome Annotation:
contigs: 484
bases: 5,219,070 bps
CDS: 4,342
rRNA: 5
Repeat region:
tmRNA: 1
tRNA: 67
misc RNA:
Total features: 4,415
Total number of protein coding genes annotated/found:
4,342
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Items 1 - 20
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Molecule
PID/GenBank ID *^
Sequences
Size (NA/AA) ^
Range ^
Gene Product Name
SEQF5047|JADGLP010000316.1
SEQF5047_02748
Genome Viewer
NA
AA
372/124
531-160
hypothetical protein
SEQF5047|JADGLP010000316.1
SEQF5047_02749
Genome Viewer
NA
AA
1188/396
1799-612
2-amino-3-ketobutyrate coenzyme A ligase
SEQF5047|JADGLP010000316.1
SEQF5047_02750
Genome Viewer
NA
AA
954/318
1934-2887
putative epimerase/dehydratase
SEQF5047|JADGLP010000316.1
SEQF5047_02751
Genome Viewer
NA
AA
849/283
2887-3735
hypothetical protein
SEQF5047|JADGLP010000316.1
SEQF5047_02752
Genome Viewer
NA
AA
990/330
3790-4779
UDP-N-acetylenolpyruvoylglucosamine reductase
SEQF5047|JADGLP010000316.1
SEQF5047_02753
Genome Viewer
NA
AA
759/253
4789-5547
Phosphoribosyl 1%2C2-cyclic phosphate phosphodiesterase
SEQF5047|JADGLP010000316.1
SEQF5047_02754
Genome Viewer
NA
AA
1575/525
5631-7205
hypothetical protein
SEQF5047|JADGLP010000316.1
SEQF5047_02755
Genome Viewer
NA
AA
375/125
8113-7739
hypothetical protein
SEQF5047|JADGLP010000316.1
SEQF5047_02756
Genome Viewer
NA
AA
1122/374
8266-9387
Beta sliding clamp
SEQF5047|JADGLP010000316.1
SEQF5047_02757
Genome Viewer
NA
AA
780/260
9503-10282
3'-5' exonuclease DinG
SEQF5047|JADGLP010000316.1
SEQF5047_02758
Genome Viewer
NA
AA
1218/406
10282-11499
Cysteine/Cysteine sulfinic acid decarboxylase
SEQF5047|JADGLP010000316.1
SEQF5047_02759
Genome Viewer
NA
AA
1662/554
11509-13170
DNA repair protein RecN
SEQF5047|JADGLP010000316.1
SEQF5047_02760
Genome Viewer
NA
AA
744/248
13227-13970
Putative TrmH family tRNA/rRNA methyltransferase
SEQF5047|JADGLP010000316.1
SEQF5047_02761
Genome Viewer
NA
AA
1707/569
13972-15678
hypothetical protein
SEQF5047|JADGLP010000316.1
SEQF5047_02762
Genome Viewer
NA
AA
375/125
15973-16347
2-iminobutanoate/2-iminopropanoate deaminase
SEQF5047|JADGLP010000316.1
SEQF5047_02763
Genome Viewer
NA
AA
1491/497
17805-16315
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2%2C6-diaminopimelate ligase
SEQF5047|JADGLP010000316.1
SEQF5047_02764
Genome Viewer
NA
AA
1326/442
17939-19264
hypothetical protein
SEQF5047|JADGLP010000316.1
SEQF5047_02765
Genome Viewer
NA
AA
984/328
20359-19376
Dihydroorotate dehydrogenase
SEQF5047|JADGLP010000316.1
SEQF5047_02766
Genome Viewer
NA
AA
675/225
21043-20369
Pyridoxal phosphate homeostasis protein
SEQF5047|JADGLP010000316.1
SEQF5047_02767
Genome Viewer
NA
AA
480/160
21529-21050
hypothetical protein
Items 1 - 20
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* Click GI, UID, Gene Product to go to NCBI record
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Copyright 2020 Forsyth Institute
Page last updated: July 7, 2021 08:39:35
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